From a08cb952b444947c66d832325ec75701eec99f7c Mon Sep 17 00:00:00 2001
From: Adrien Klose <ikenex3@gmail.com>
Date: Mon, 18 Mar 2024 10:15:15 +0100
Subject: [PATCH] Overview of Bioasq relevant tasks and data

---
 ideas_practice/code/.gitignore            |    1 +
 ideas_practice/code/bioasq_overview.ipynb | 1375 +++++++++++++++++++++
 src/ressources/bioasq.txt                 |   60 +
 src/ressources/listing.md                 |    5 +-
 4 files changed, 1440 insertions(+), 1 deletion(-)
 create mode 100644 ideas_practice/code/.gitignore
 create mode 100644 ideas_practice/code/bioasq_overview.ipynb
 create mode 100644 src/ressources/bioasq.txt

diff --git a/ideas_practice/code/.gitignore b/ideas_practice/code/.gitignore
new file mode 100644
index 0000000..9fe7ee4
--- /dev/null
+++ b/ideas_practice/code/.gitignore
@@ -0,0 +1 @@
+.ipynm_checkpoints/*
diff --git a/ideas_practice/code/bioasq_overview.ipynb b/ideas_practice/code/bioasq_overview.ipynb
new file mode 100644
index 0000000..0ff8903
--- /dev/null
+++ b/ideas_practice/code/bioasq_overview.ipynb
@@ -0,0 +1,1375 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "f8cf436b-c7c1-4a78-b776-1c4130b66374",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import json"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "id": "561381d0-5911-40fb-9da7-af4bf5b9571c",
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "with open(\"../data/selected_questions.json\", \"r\") as f:\n",
+    "  sq = json.load(f)\n",
+    "with open(\"../data/BioASQ-SampleDataB.json\", \"r\") as f:\n",
+    "  sd = json.load(f)\n",
+    "with open(\"../data/training12b_new.json\", \"r\") as f:   #\n",
+    "  train12b = json.load(f)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "id": "b03d3b77-8915-42ae-9d4e-a9bc508badfd",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "322\n",
+      "8\n",
+      "5046\n"
+     ]
+    }
+   ],
+   "source": [
+    "print(len(sq))\n",
+    "print(len(sd[\"questions\"]))\n",
+    "print(len(train12b[\"questions\"]))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 15,
+   "id": "ced71f96-51ea-40e4-b65b-7ca0ec666f79",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "dict_keys(['body', 'documents', 'triples', 'ideal_answer', 'exact_answer', 'concepts', 'type', 'id', 'snippets'])\n"
+     ]
+    }
+   ],
+   "source": [
+    "print(sq[0].keys())"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 27,
+   "id": "dfce611d-e10f-4a3f-8b4f-519a9fc61a58",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "dict_keys(['p', 's', 'o'])\n"
+     ]
+    }
+   ],
+   "source": [
+    "print(sq[0][\"triples\"][0].keys())"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 19,
+   "id": "dc8d8fbc-9097-4e1f-a75d-888499e5146f",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'summary', 'factoid', 'yesno', 'list'}\n",
+      "107\n"
+     ]
+    }
+   ],
+   "source": [
+    "qtypes = set()\n",
+    "sum = 0\n",
+    "for question in sq:\n",
+    "    qtypes.add(question[\"type\"])\n",
+    "    if question[\"type\"] == \"yesno\":\n",
+    "        sum+=1\n",
+    "print(qtypes)\n",
+    "print(sum)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 25,
+   "id": "1f285ab1-699b-4654-8f30-1081869c29c7",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "322\n",
+      "107\n"
+     ]
+    }
+   ],
+   "source": [
+    "# number of questions that have triples\n",
+    "sum_trip = 0\n",
+    "data_both = []\n",
+    "for question in train12b[\"questions\"]:\n",
+    "    if \"triples\" in question:\n",
+    "        sum_trip+=1\n",
+    "        if question[\"type\"] == \"yesno\":\n",
+    "            data_both.append(question)\n",
+    "print(sum_trip)\n",
+    "print(len(data_both))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 51,
+   "id": "10a56e4a-de5a-4b73-bf93-49d344d7e689",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "1916\n"
+     ]
+    }
+   ],
+   "source": [
+    "num_trip = 0\n",
+    "for question in data_both:\n",
+    "    num_trip += len(question[\"triples\"])\n",
+    "    for triple in question[\"triples\"]:\n",
+    "        keys = triple.keys()\n",
+    "        if \"o\" not in keys or \"p\" not in keys or \"s\" not in keys:\n",
+    "            print(\"o or p or s is missing\")\n",
+    "        #if key not in set([\"o\", \"p\", \"s\"]):\n",
+    "        #    print(\"a different entry has been found\")\n",
+    "        if len(keys) != 3:\n",
+    "            print(\"There are not exactly 3 entries!\")\n",
+    "print(num_trip)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 49,
+   "id": "26ce46fb-692f-48ea-82ae-1b28dafa6fe2",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'http://linkedlifedata.com/resource/pubmed/registryNumber', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/possibleDiseaseTarget', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/diseaseSubtypeOf', 'http://www.w3.org/2008/05/skos-xl#literalForm', 'http://purl.uniprot.org/core/alternativeName', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/class', 'http://data.linkedct.org/resource/linkedct/intervention_name', 'http://linkedlifedata.com/resource/umls/relatedConcept', 'http://www.w3.org/2004/02/skos/core#definition', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/possibleDrug', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#type', 'http://data.linkedct.org/resource/linkedct/intervention_type', 'http://purl.uniprot.org/core/title', 'http://purl.uniprot.org/core/encodedBy', 'http://data.linkedct.org/resource/linkedct/condition_name', 'http://www.w3.org/2004/02/skos/core#inScheme', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/associatedGene', 'http://purl.uniprot.org/core/submittedName', 'http://purl.uniprot.org/core/alias', 'http://linkedlifedata.com/resource/geneontology/regulates', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/chromosomalLocation', 'http://linkedlifedata.com/resource/relationontology/treat', 'http://www.w3.org/2004/02/skos/core#narrower', 'http://purl.uniprot.org/core/reviewed', 'http://purl.uniprot.org/core/mnemonic', 'http://linkedlifedata.com/resource/relationontology/participateInBiologicalProcess', 'http://www.w3.org/2000/01/rdf-schema#comment', 'http://purl.uniprot.org/core/recommendedName', 'http://purl.uniprot.org/core/partOf', 'http://purl.uniprot.org/core/fullName', 'http://linkedlifedata.com/resource/relationontology/expressedInAnatomicalSystem', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/omimPage', 'http://www.w3.org/2004/02/skos/core#altLabel', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#subject', 'http://linkedlifedata.com/resource/relationontology/expressedInCellLine', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/description', 'http://linkedlifedata.com/resource/umls/prefMetaMap', 'http://www.w3.org/2004/02/skos/core#broader', 'http://purl.uniprot.org/core/basedOn', 'http://linkedlifedata.com/resource/relationontology/binding', 'http://linkedlifedata.com/resource/geneontology/namespace', 'http://www.w3.org/2004/02/skos/core#exactMatch', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/omim', 'http://linkedlifedata.com/resource/relationontology/hasSideEffect', 'http://purl.uniprot.org/core/shortName', 'http://www.w3.org/2004/02/skos/core#notation', 'http://www.w3.org/2008/05/skos-xl#altLabel', 'http://purl.uniprot.org/core/orfName', 'http://linkedlifedata.com/resource/relationontology/hasLocalization', 'http://data.linkedct.org/resource/linkedct/nct_alias', 'http://purl.uniprot.org/core/sequence', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/secondaryAccessionNumber', 'http://purl.uniprot.org/core/ecName', 'http://purl.uniprot.org/core/citation', 'http://www.w3.org/2008/05/skos-xl#prefLabel', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/pharmacology', 'http://data.linkedct.org/resource/linkedct/condition', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseasome/name', 'http://purl.uniprot.org/core/classifiedWith', 'http://www.w3.org/2004/02/skos/core#prefLabel', 'http://www.w3.org/2004/02/skos/core#relatedSynonym', 'http://www.w3.org/2004/02/skos/core#note', 'http://linkedlifedata.com/resource/umls/relation', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/primaryAccessionNo', 'http://purl.uniprot.org/core/isolatedFrom', 'http://purl.uniprot.org/core/name', 'http://www.w3.org/2000/01/rdf-schema#label', 'http://linkedlifedata.com/resource/umls/altMetaMap', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/chemicalIupacName'}\n",
+      "69\n",
+      "{'www.w3.org', 'www4.wiwiss.fu-berlin.de', 'purl.uniprot.org', 'data.linkedct.org', 'linkedlifedata.com'}\n",
+      "{'skos-xl#literalForm', 'submittedName', 'recommendedName', 'core#notation', 'pharmacology', 'expressedInAnatomicalSystem', 'relatedConcept', 'core#narrower', 'citation', 'intervention_type', 'expressedInCellLine', 'rdf-schema#label', 'encodedBy', 'class', 'skos-xl#altLabel', '22-rdf-syntax-ns#subject', 'associatedGene', 'core#exactMatch', 'possibleDiseaseTarget', 'chromosomalLocation', 'nct_alias', 'condition', 'relation', 'isolatedFrom', 'prefMetaMap', 'chemicalIupacName', 'namespace', 'regulates', 'description', 'core#prefLabel', 'treat', 'condition_name', 'participateInBiologicalProcess', 'rdf-schema#comment', 'omimPage', 'name', 'core#definition', 'primaryAccessionNo', 'shortName', 'reviewed', 'partOf', 'core#note', 'diseaseSubtypeOf', 'alias', 'core#relatedSynonym', 'ecName', 'omim', 'secondaryAccessionNumber', 'fullName', 'basedOn', 'intervention_name', 'hasLocalization', 'sequence', 'binding', 'possibleDrug', '22-rdf-syntax-ns#type', 'orfName', 'classifiedWith', 'core#inScheme', 'alternativeName', 'core#altLabel', 'skos-xl#prefLabel', 'title', 'registryNumber', 'mnemonic', 'core#broader', 'altMetaMap', 'hasSideEffect'}\n"
+     ]
+    }
+   ],
+   "source": [
+    "# take a look at what is in the p field\n",
+    "p = set()\n",
+    "for question in data_both:\n",
+    "    for triple in question[\"triples\"]:\n",
+    "        p.add(triple[\"p\"])\n",
+    "print(p)\n",
+    "print(len(p))\n",
+    "\n",
+    "base_websites = set()\n",
+    "possible_relations = set()\n",
+    "for string in p:\n",
+    "    if \"http://\" not in string:\n",
+    "        print(\"Not a link.\")\n",
+    "    base = string.split(\"/\")\n",
+    "    base_websites.add(base[2])\n",
+    "    possible_relations.add(base[-1])\n",
+    "print(base_websites)\n",
+    "print(possible_relations)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 56,
+   "id": "3659945b-92b7-4060-9a3e-d032ef49cd1a",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "{'http://linkedlifedata.com/resource/umls/label/A17937093', 'http://linkedlifedata.com/resource/#_42344734533800E', 'http://linkedlifedata.com/resource/geneontology/id/GO:0005829', 'http://linkedlifedata.com/resource/umls/relation/R69865242', 'http://linkedlifedata.com/resource/#_51323938573700A', 'http://linkedlifedata.com/resource/umls/label/A18647416', 'http://linkedlifedata.com/resource/#_50363830373800A', 'http://linkedlifedata.com/resource/#_503638303730008', 'http://linkedlifedata.com/resource/umls/id/C1311653', 'http://linkedlifedata.com/resource/umls/label/A0477612', 'http://linkedlifedata.com/resource/#_51343558483800A', 'http://linkedlifedata.com/resource/umls/id/C0066357', 'http://linkedlifedata.com/resource/umls/label/A17902718', 'http://purl.uniprot.org/uniprot/P68071', 'http://linkedlifedata.com/resource/#_50363830363800C', 'http://data.linkedct.org/resource/trials/NCT00425776', 'http://purl.uniprot.org/go/0016236', 'http://data.linkedct.org/resource/trials/NCT00577720', 'http://linkedlifedata.com/resource/#_503638303731009', 'http://purl.uniprot.org/citations/16710414', 'http://linkedlifedata.com/resource/rxnorm/id/11118', 'http://linkedlifedata.com/resource/#_513135393432002F', 'http://linkedlifedata.com/resource/#_503638303737009', 'http://linkedlifedata.com/resource/#_5130383238300018', 'http://purl.uniprot.org/uniprot/P68030', 'http://linkedlifedata.com/resource/umls/relation/R54226105', 'http://linkedlifedata.com/resource/umls/label/A18361057', 'http://linkedlifedata.com/resource/rxnorm/label/4224011', 'http://linkedlifedata.com/resource/umls/id/C0035372', 'http://data.linkedct.org/resource/trials/NCT00455741', 'http://linkedlifedata.com/resource/umls/label/A6986254', 'http://linkedlifedata.com/resource/#_5136313033370014', 'http://linkedlifedata.com/resource/umls/relation/R69798948', 'http://linkedlifedata.com/resource/#_513654563139001C', 'http://linkedlifedata.com/resource/#_50313937363000C', 'http://linkedlifedata.com/resource/#_42344734533800D', 'http://linkedlifedata.com/resource/#_42344B42463600A', 'http://linkedlifedata.com/resource/#_51335A4E30380015', 'http://linkedlifedata.com/resource/umls/id/C1515673', 'http://purl.uniprot.org/uniprot/Q12092', 'http://purl.uniprot.org/pubmed/16710414', 'http://linkedlifedata.com/resource/umls/label/A17974184', 'http://linkedlifedata.com/resource/umls/label/A11572307', 'http://purl.uniprot.org/uniprot/B4NFR1', 'http://purl.uniprot.org/pubmed/12419828', 'http://linkedlifedata.com/resource/#_503638303330007', 'http://linkedlifedata.com/resource/umls/relation/R108527985', 'http://linkedlifedata.com/resource/umls/relation/R108535497', 'http://linkedlifedata.com/resource/#_50363830373100A', 'http://linkedlifedata.com/resource/#_50313937363000B', 'http://linkedlifedata.com/resource/umls/label/A0106149', 'http://linkedlifedata.com/resource/umls/label/A0484290', 'http://linkedlifedata.com/resource/umls/label/A0119455', 'http://purl.uniprot.org/uniprot/B6ZCQ7', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/3277', 'http://linkedlifedata.com/resource/umls/label/A14256646', 'http://purl.uniprot.org/uniprot/P42898', 'http://linkedlifedata.com/resource/umls/id/C2682645', 'http://linkedlifedata.com/resource/#_4F3634393935004', 'http://purl.uniprot.org/isoforms/Q12797-3', 'http://data.linkedct.org/resource/trials/NCT00005466', 'http://linkedlifedata.com/resource/umls/id/C1704892', 'http://linkedlifedata.com/resource/#_44374C42553200A', 'http://linkedlifedata.com/resource/umls/id/C1867068', 'http://linkedlifedata.com/resource/umls/label/A17888724', 'http://linkedlifedata.com/resource/umls/label/A0057877', 'http://linkedlifedata.com/resource/rxnorm/label/3254597', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/DB03431', 'http://purl.uniprot.org/uniprot/B1GYH1', 'http://linkedlifedata.com/resource/umls/label/A2143236', 'http://purl.uniprot.org/pubmed/10572112', 'http://linkedlifedata.com/resource/#_503638303638009', 'http://linkedlifedata.com/resource/umls/id/C1317909', 'http://linkedlifedata.com/resource/umls/label/A11932850', 'http://linkedlifedata.com/resource/umls/id/C2917754', 'http://linkedlifedata.com/resource/umls/label/A17885052', 'http://linkedlifedata.com/resource/umls/id/C1259941', 'http://linkedlifedata.com/resource/umls/relation/R108512678', 'http://linkedlifedata.com/resource/#_5136323532330010', 'http://linkedlifedata.com/resource/diseaseontology/id/DOID:1572', 'http://linkedlifedata.com/resource/umls/id/C0596306', 'http://linkedlifedata.com/resource/umls/label/A0195956', 'http://linkedlifedata.com/resource/#_503638303730007', 'http://linkedlifedata.com/resource/#_4F303838373600A', 'http://purl.uniprot.org/uniprot/P19760', 'http://linkedlifedata.com/resource/umls/id/C1843296', 'http://linkedlifedata.com/resource/umls/label/A17399048', 'http://linkedlifedata.com/resource/umls/label/A11914653', 'http://linkedlifedata.com/resource/umls/label/A16995906', 'http://linkedlifedata.com/resource/umls/id/C1867063', 'http://linkedlifedata.com/resource/umls/id/C0007117', 'http://purl.uniprot.org/uniprot/B3DLA6', 'http://linkedlifedata.com/resource/umls/label/A2792113', 'http://purl.uniprot.org/uniprot/Q61037', 'http://linkedlifedata.com/resource/umls/label/A11975890', 'http://linkedlifedata.com/resource/#_513132373937001E', 'http://linkedlifedata.com/resource/umls/id/C0245179', 'http://linkedlifedata.com/resource/umls/label/A7572292', 'http://linkedlifedata.com/resource/umls/label/A12026189', 'http://linkedlifedata.com/resource/umls/label/A0066521', 'http://linkedlifedata.com/resource/umls/label/A16717035', 'http://linkedlifedata.com/resource/#_50363830363800A', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/4098', 'http://linkedlifedata.com/resource/umls/relation/R54228336', 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'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/251', 'http://linkedlifedata.com/resource/#_4F383930393100D', 'http://purl.uniprot.org/pubmed/9046088', 'http://linkedlifedata.com/resource/umls/label/A0057942', 'http://linkedlifedata.com/resource/umls/id/C1426592', 'http://linkedlifedata.com/resource/#_42334C59533500D', 'http://linkedlifedata.com/resource/umls/label/A18593781', 'http://linkedlifedata.com/resource/umls/label/A0235686', 'http://linkedlifedata.com/resource/umls/relation/R108507918', 'http://linkedlifedata.com/resource/#_4F3634393934005', 'http://data.linkedct.org/resource/trials/NCT00009659', 'http://linkedlifedata.com/resource/umls/label/A17763944', 'http://purl.uniprot.org/pubmed/10339464', 'http://linkedlifedata.com/resource/umls/id/C2341627', 'http://linkedlifedata.com/resource/umls/label/A18469770', 'http://linkedlifedata.com/resource/umls/label/A1545807', 'http://linkedlifedata.com/resource/umls/label/A0418144', 'http://purl.uniprot.org/tissues/1050', 'http://linkedlifedata.com/resource/umls/label/A18463494', 'http://linkedlifedata.com/resource/#_503638303639007', 'http://linkedlifedata.com/resource/#_4F383737393600D', 'http://linkedlifedata.com/resource/umls/label/A17035190', 'http://linkedlifedata.com/resource/umls/label/A0106726', 'http://purl.uniprot.org/uniprot/B4KBF6', 'http://linkedlifedata.com/resource/#_4F38393039310010', 'http://linkedlifedata.com/resource/umls/label/A16608313', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/441', 'http://linkedlifedata.com/resource/umls/id/C1319315', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/HNPCC4', 'http://data.linkedct.org/resource/trials/NCT00367536', 'http://purl.uniprot.org/uniprot/A0MQH0', 'http://linkedlifedata.com/resource/umls/id/C1428691', 'http://linkedlifedata.com/resource/umls/id/C0018801', 'http://linkedlifedata.com/resource/umls/label/A10769673', 'http://linkedlifedata.com/resource/umls/label/A0484584', 'http://linkedlifedata.com/resource/umls/id/C0004352', 'http://linkedlifedata.com/resource/umls/label/A8414547', 'http://purl.uniprot.org/pubmed/1639402', 'http://linkedlifedata.com/resource/#_5035333834310018', 'http://purl.uniprot.org/uniprot/O64995', 'http://purl.uniprot.org/pubmed/16981842', 'http://data.linkedct.org/resource/trials/NCT00000481', 'http://purl.uniprot.org/uniprot/P53755', 'http://linkedlifedata.com/resource/umls/label/A17999026', 'http://linkedlifedata.com/resource/umls/id/C2745360', 'http://linkedlifedata.com/resource/umls/label/A0487662', 'http://data.linkedct.org/resource/trials/NCT00094237', 'http://linkedlifedata.com/resource/umls/id/C0206510', 'http://linkedlifedata.com/resource/umls/label/A11943486', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/HNPCC2', 'http://linkedlifedata.com/resource/#_513132373937001D'}\n",
+      "1007\n"
+     ]
+    }
+   ],
+   "source": [
+    "# take a look at what is in the s field\n",
+    "s = set()\n",
+    "for question in data_both:\n",
+    "    for triple in question[\"triples\"]:\n",
+    "        s.add(triple[\"s\"])\n",
+    "        if \"http\" not in triple[\"s\"]:\n",
+    "            print(\"Not a Link\")\n",
+    "print(s)\n",
+    "print(len(s))\n",
+    "\n",
+    "#base_websites = set()\n",
+    "#possible_relations = set()\n",
+    "#for string in p:\n",
+    "#    if \"http://\" not in string:\n",
+    "#        print(\"Not a link.\")\n",
+    "#    base = string.split(\"/\")\n",
+    "#    base_websites.add(base[2])\n",
+    "#    possible_relations.add(base[-1])\n",
+    "#print(base_websites)\n",
+    "#print(possible_relations)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 58,
+   "id": "f8b741e2-ae9b-4e49-a557-9a736c6e0c0d",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
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+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
+      "Not a Link\n",
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+      "Not a Link\n",
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+      "Not a Link\n",
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+      "Not a Link\n",
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+      "{'http://linkedlifedata.com/resource/umls/label/A17937093', 'http://linkedlifedata.com/resource/#_42344734533800E', 'focal adhesion kinase activity', 'http://linkedlifedata.com/resource/geneontology/id/GO:0005829', 'Trial NCT00472927', 'Trial NCT00000598', 'http://linkedlifedata.com/resource/umls/label/A18647416', 'Drug', 'http://linkedlifedata.com/resource/#_50363830373800A', 'Isotretinoin is a medication used for the treatment of severe acne. It is sometimes used in prevention of certain skin cancers. It is a retinoid, meaning it derives from vitamin A and is found in small quantities naturally in the body. Isotretinoin binds to and activates nuclear retinoic acid receptors (RAR), thereby regulating cell proliferation and differentiation. This agent also exhibits immunomodulatory and anti-inflammatory responses and inhibits ornithine decarboxylase, thereby decreasing polyamine synthesis and keratinization.', 'http://linkedlifedata.com/resource/umls/label/A0363752', 'mmu-mir-126', 'http://linkedlifedata.com/resource/#_503638303730008', 'glioblastoma', 'http://linkedlifedata.com/resource/umls/label/A0477612', 'Viruses, RNA', 'Triadin', 'http://linkedlifedata.com/resource/#_51343558483800A', 'http://linkedlifedata.com/resource/umls/label/A17902718', 'intraoperative radiotherapy', 'PCSK9', 'http://purl.uniprot.org/citations/10584558', 'http://linkedlifedata.com/resource/#_50363830363800C', 'Vemurafenib', 'D009474', 'ASPARTATE BETA-HYDROXYLASE', 'http://linkedlifedata.com/resource/#_503638303731009', 'http://purl.uniprot.org/citations/16710414', 'double homeobox, 4 protein, human', 'GDNF inducible factor protein, mouse', 'C419389', 'http://linkedlifedata.com/resource/#_513135393432002F', 'http://linkedlifedata.com/resource/#_503638303737009', 'http://linkedlifedata.com/resource/#_5130383238300018', 'http://linkedlifedata.com/resource/rxnorm/label/4224011', 'SMALL NUCLEOLAR RNA, C/D BOX, 116-1', 'inter-alpha-trypsin inhibitor', 'PMSL2', 'rett syndrome', 'http://linkedlifedata.com/resource/umls/label/A6986254', 'Aspartyl/asparaginyl beta-hydroxylase', 'http://linkedlifedata.com/resource/#_5136313033370014', 'Cardiomyopathies, Dilated', 'HBII-85-1', 'junctate protein, human', 'http://linkedlifedata.com/resource/#_50313937363000C', 'inter-alpha-trypsin inhibitor, heavy chain', 'http://linkedlifedata.com/resource/#_51335A4E30380015', 'http://purl.uniprot.org/pubmed/16710414', 'Trial NCT00443716', 'BAH', 'Genomics', 'Yeast', 'BSC5', 'MISMATCH REPAIR CANCER SYNDROME', 'Peripheral and cytoplasmic desmoplakin staining (immunohistochemistry) ELECTRON MICROSCOPY:', 'http://purl.uniprot.org/pubmed/12419828', 'C39238', 'http://linkedlifedata.com/resource/#_503638303330007', 'Striated muscle', 'EGR alpha protein, human', 'http://linkedlifedata.com/resource/umls/relation/R108527985', 'http://linkedlifedata.com/resource/umls/relation/R108535497', 'CHRONIC DISEASE/urine', 'http://linkedlifedata.com/resource/#_50363830373100A', 'http://linkedlifedata.com/resource/#_50313937363000B', 'Trial NCT00000559', 'APREMILAST', 'Intervention #24334 (Drug:HCV polymerase inhibitor pro-drug)', 'D052158', 'Trial NCT00294463', 'D014157', 'Charcot-Marie-Tooth disease, type 2D, 601472', 'http://linkedlifedata.com/resource/umls/label/A14256646', 'http://purl.uniprot.org/medline/22737999', 'Metathesaurus Names', 'http://linkedlifedata.com/resource/#_4F3634393935004', 'C112810', 'http://purl.uniprot.org/isoforms/Q12797-3', 'muscle contraction', 'G gamma Globin', 'COCA2', 'PRADER-WILLI CRITICAL REGION GENE 1', 'ASP beta-hydroxylase', 'http://linkedlifedata.com/resource/#_44374C42553200A', 'Turcot Syndrome', 'http://linkedlifedata.com/resource/umls/relation/R108520872', 'http://linkedlifedata.com/resource/umls/label/A17888724', 'focal contact', 'ASPH gene', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/DB03431', 'Alignments, Sequence', 'http://linkedlifedata.com/resource/umls/label/A2143236', 'http://linkedlifedata.com/resource/rxnorm/label/3254597', 'TIEG1', '114251.0001', 'transposition, RNA-mediated', 'http://linkedlifedata.com/resource/#_503638303638009', 'Virus, RNA', 'http://linkedlifedata.com/resource/umls/label/A11932850', 'Trastuzumab', 'http://linkedlifedata.com/resource/#_5136323532330010', 'Trial NCT00005441', 'expt00458', 'http://linkedlifedata.com/resource/#_503638303730007', 'miR-126, zebrafish', 'http://linkedlifedata.com/resource/umls/label/A11914653', 'http://linkedlifedata.com/resource/umls/label/A16995906', 'early growth response alpha protein, human', 'Trial NCT00009659', 'ASPH', 'C098111', 'pseudopodium', 'Charcot-Marie-Tooth disease, neuronal, Type 2D', 'http://linkedlifedata.com/resource/umls/label/A11975890', 'http://linkedlifedata.com/resource/umls/label/A2792113', 'Trial NCT00574574', 'Trial NCT00000466', 'Trial NCT00023543', 'Involvement of p53 in X-ray induced intrachromosomal recombination in mice.', 'EGRA protein, human', 'KLF10', 'http://dbpedia.org/resource/Trastuzumab', 'http://linkedlifedata.com/resource/umls/label/A12026189', 'Phospholipid', 'http://linkedlifedata.com/resource/umls/label/A0066521', 'N0000170367', 'http://linkedlifedata.com/resource/umls/label/A16717035', 'http://linkedlifedata.com/resource/#_50363830363800A', 'Densosumab', '3.6.5.-', 'TGFB inducible early growth response protein, human', 'http://purl.uniprot.org/tissues/933', 'http://linkedlifedata.com/resource/rxnorm/label/3130515', 'http://linkedlifedata.com/resource/umls/label/A18591807', 'Metabolic Cardiovascular Syndrome', 'http://linkedlifedata.com/resource/#_42344B42463600B', 'POLD3', 'Desvenlafaxine 50 MG Extended Release Tablet', 'NCI2009_04D:C40430', 'http://linkedlifedata.com/resource/#_50363830363900A', 'MMRCS', 'SNOMEDCT_2010_1_31:30753002', 'http://linkedlifedata.com/resource/umls/label/A2864179', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseaseClass/Cancer', 'http://linkedlifedata.com/resource/#_503038323234008', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/1155', 'Pseudopodium', 'http://linkedlifedata.com/resource/umls/label/A8401237', 'expt00436', 'C537993', 'http://linkedlifedata.com/resource/umls/relation/R108520861', 'http://linkedlifedata.com/resource/umls/label/A20715582', 'Trial NCT00029757', 'http://linkedlifedata.com/resource/umls/label/A6970526', 'retrotransposition', 'http://linkedlifedata.com/resource/umls/label/A10771788', 'http://linkedlifedata.com/resource/umls/label/A17397784', 'IMMUNOHISTOCHEMISTRY REAGENTS AND KITS', 'http://linkedlifedata.com/resource/umls/label/A8428062', 'gene therapy', 'http://linkedlifedata.com/resource/#_4F3634393937006', 'JARID2', 'Zyxin', 'Charcot-Marie-Tooth disease, Type 2D', 'http://linkedlifedata.com/resource/#_423147594831006', 'http://linkedlifedata.com/resource/umls/label/A7638941', 'http://linkedlifedata.com/resource/umls/label/A8400738', 'cryptococcus neoformans', 'Proteins, Membrane-Associated', 'http://linkedlifedata.com/resource/#_513034353834008', 'Transcription Factors [Chemical/Ingredient]', 'Acrosomal protein ACPIN1', 'Isotretinoin', 'http://purl.uniprot.org/citations/14562095', 'MMR DEFICIENCY', 'http://linkedlifedata.com/resource/#_503638303731007', '308106', 'C499374', 'http://linkedlifedata.com/resource/umls/relation/R108520854', 'Gene Therapy', 'http://linkedlifedata.com/resource/umls/label/A0107210', 'dexamethasone', 'http://dbpedia.org/resource/Rheumatoid_arthritis', 'http://linkedlifedata.com/resource/umls/relation/R108937798', 'http://linkedlifedata.com/resource/umls/label/A11957838', 'http://linkedlifedata.com/resource/umls/relation/R108520855', 'http://purl.uniprot.org/medline/97313270', 'http://purl.uniprot.org/uniprot/P42898', 'http://linkedlifedata.com/resource/umls/label/A15591265', 'http://linkedlifedata.com/resource/umls/relation/R108520863', 'http://linkedlifedata.com/resource/#_5138313155340017', 'DNA-Binding Proteins [Chemical/Ingredient]', 'http://linkedlifedata.com/resource/#_503638303738009', 'http://linkedlifedata.com/resource/umls/label/A8400590', 'http://linkedlifedata.com/resource/umls/relation/R108533841', 'http://linkedlifedata.com/resource/umls/label/A7659777', 'R54', 'DNA-Binding Proteins', 'Trial NCT00651534', 'http://linkedlifedata.com/resource/#_4F373736353500A', 'http://linkedlifedata.com/resource/umls/label/A18450882', 'http://www.dbpedia.org/resource/PMS2', 'JUNCTIN', 'http://purl.uniprot.org/locations/298', 'http://purl.uniprot.org/citations/105752', 'The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure, which then fuse with the lysosome (or vacuole) releasing a single-membrane-bounded autophagic bodies which are then degraded within the lysosome (or vacuole). Though once thought to be a purely non-selective process, it appears that some types of macroautophagy, e.g. macropexophagy, macromitophagy, may involve selective targeting of the targets to be degraded.', 'Turcot syndrome (disorder)', 'CNS tumors with Familial polyposis of the colon', 'Imatinib', 'Transmembrane GTPase MFN1', 'http://linkedlifedata.com/resource/umls/label/A19343187', 'http://linkedlifedata.com/resource/umls/relation/R108527988', 'http://linkedlifedata.com/resource/#_4F3737363535008', 'http://linkedlifedata.com/resource/umls/relation/R108536636', 'Trial NCT00195455', '27218', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/PMSL2', 'http://purl.uniprot.org/pubmed/11062157', 'Chromosome 5', 'Flaviviridae', 'http://purl.uniprot.org/uniprot/P34761', 'Trial NCT00727142', 'focal adhesion', 'http://linkedlifedata.com/resource/umls/label/A1378212', 'Trial NCT00361075', 'Trial NCT00000613', 'Glyburide', 'Glioma', 'Hepacivirus infectious disease', 'http://purl.uniprot.org/citations/9046088', 'Trial NCT00235924', 'http://linkedlifedata.com/resource/#_51313330363100B', 'http://linkedlifedata.com/resource/umls/relation/R108533302', 'http://linkedlifedata.com/resource/#_503832313739009', 'http://linkedlifedata.com/resource/umls/label/A12014935', 'http://linkedlifedata.com/resource/#_503638303730009', 'http://linkedlifedata.com/resource/umls/label/A16615647', 'http://www.geneontology.org/go#GO:0005925', 'http://linkedlifedata.com/resource/umls/label/A7798511', 'C477334', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, SER2246LEU', '5004-0064', 'HAAH', 'http://linkedlifedata.com/resource/#_503638303639009', 'http://linkedlifedata.com/resource/#_4F303838373600E', 'RYR2, ARG2474SER', 'ITI heavy chain H3', 'http://linkedlifedata.com/resource/umls/label/A7828632', 'http://linkedlifedata.com/resource/#_513057534338006', 'Curcumin Oral Capsule', 'Cardiolipins', 'Factors, Transcription', 'SNORD116-1', 'http://linkedlifedata.com/resource/geneontology/id/GO:0006936', 'Trial NCT00745173', 'http://linkedlifedata.com/resource/#_503032303937007', 'Stat3 Signaling Pathway', 'http://data.linkedct.org/resource/condition/10439', 'proprotein convertase subtilisin/kexin type 9', 'Peptide Aptamers', 'MELIOIDOSIS', 'http://linkedlifedata.com/resource/umls/label/A17004235', 'http://linkedlifedata.com/resource/umls/label/A18468134', 'http://purl.uniprot.org/uniprot/Q12140', 'http://linkedlifedata.com/resource/umls/label/A18084860', 'http://linkedlifedata.com/resource/umls/relation/R54326923', 'http://linkedlifedata.com/resource/umls/label/A7828631', 'DB02930', 'http://purl.uniprot.org/citations/6157408', 'http://linkedlifedata.com/resource/#_513435584835009', 'Protein Deregulation', 'C36345', 'Carcinogenesis', 'http://linkedlifedata.com/resource/umls/label/A11993336', 'http://linkedlifedata.com/resource/umls/label/A8419254', 'http://www.dbpedia.org/resource/Rheumatoid_arthritis', 'http://linkedlifedata.com/resource/umls/label/A11967491', 'http://linkedlifedata.com/resource/umls/label/A7628038', 'http://linkedlifedata.com/resource/umls/label/A12986334', 'http://linkedlifedata.com/resource/umls/label/A16700759', 'http://linkedlifedata.com/resource/#_50353337353500C', 'CSQ binding protein, mouse', 'http://linkedlifedata.com/resource/umls/label/A12006059', 'http://linkedlifedata.com/resource/#_423350304B3600D', 'Trial NCT00152282', 'http://linkedlifedata.com/resource/umls/label/A11649841', 'http://linkedlifedata.com/resource/#_5130383238300017', 'Protein BZZ1', 'FDA Structured Product Labels', 'Bypass of stop codon protein 4', 'TRDN', 'http://linkedlifedata.com/resource/#_51343558483500A', 'http://linkedlifedata.com/resource/umls/label/A15520455', '993449', 'http://linkedlifedata.com/resource/umls/label/A17691068', 'histone chaperone', 'BSC4', 'http://linkedlifedata.com/resource/umls/label/A8410040', 'NJW', 'Muscle Proteins [Chemical/Ingredient]', 'http://linkedlifedata.com/resource/umls/label/A16608079', 'http://linkedlifedata.com/resource/umls/relation/R108537658', '5 chromosome', 'ferric carboxymaltose', 'Aptamers, Peptide [Chemical/Ingredient]', 'http://linkedlifedata.com/resource/umls/label/A11597519', 'http://linkedlifedata.com/resource/umls/label/A1396549', 'http://linkedlifedata.com/resource/umls/label/A15532899', 'http://linkedlifedata.com/resource/umls/label/A0481276', 'http://linkedlifedata.com/resource/umls/label/A16700758', 'http://linkedlifedata.com/resource/umls/label/A17470574', 'Virus-RNA', 'PARAFFIN', 'Syndrome, Metabolic Cardiovascular', 'C498842', 'http://linkedlifedata.com/resource/umls/label/A12000277', 'http://linkedlifedata.com/resource/geneontology/id/GO:0016442', 'http://linkedlifedata.com/resource/umls/relation/R119807589', 'http://linkedlifedata.com/resource/umls/label/A8400276', 'Cpg20', 'http://purl.uniprot.org/medline/79124683', 'hydroxyurea', 'retrotransposon transposition', 'Trial NCT00010712', 'D001842', 'http://linkedlifedata.com/resource/umls/label/A11948666', 'Trial NCT00001752', '33067', 'http://purl.uniprot.org/citations/12853948', 'http://linkedlifedata.com/resource/umls/relation/R69830643', 'chromomethylase', 'http://linkedlifedata.com/resource/umls/label/A16614236', 'Trial NCT00196196', 'http://linkedlifedata.com/resource/umls/relation/R113845414', 'http://linkedlifedata.com/resource/#_503638303738007', 'Trial NCT00000601', 'Bacterium', 'Trial NCT00005152', 'http://linkedlifedata.com/resource/umls/label/A18590602', 'Trial NCT00706225', 'ITIH3', 'http://linkedlifedata.com/resource/umls/id/C1453112', 'TIEG', 'Chromomethylase', 'http://linkedlifedata.com/resource/umls/label/A9373021', 'TIEG protein, human', 'FOXO protein, Drosophila', 'http://linkedlifedata.com/resource/umls/label/A8400589', 'Trial NCT00005466', '790287', 'http://linkedlifedata.com/resource/umls/label/A17464203', 'curcumin III', 'http://linkedlifedata.com/resource/umls/label/A8423440', 'CADASIL protein, human', 'Trial NCT00233701', 'http://linkedlifedata.com/resource/umls/relation/R69817576', 'http://linkedlifedata.com/resource/geneontology/id/GO:0016236', 'http://linkedlifedata.com/resource/umls/label/A0472806', 'http://purl.uniprot.org/isoforms/Q12797-1', 'http://linkedlifedata.com/resource/umls/label/A17697100', 'http://linkedlifedata.com/resource/umls/relation/R54438032', '845106', 'http://linkedlifedata.com/resource/#_503536323835009', 'http://linkedlifedata.com/resource/#_50363830373900A', 'http://linkedlifedata.com/resource/umls/label/A12028806', 'Kruppel-like factor 10, human', 'http://linkedlifedata.com/resource/umls/label/A7584997', 'http://linkedlifedata.com/resource/umls/label/A7996376', 'http://linkedlifedata.com/resource/umls/label/A16692008', 'CONTROL MATERIAL, HER-2/NEU, IMMUNOHISTOCHEMISTRY', 'http://linkedlifedata.com/resource/umls/label/A10338320', 'http://linkedlifedata.com/resource/#_4F39353134300021', 'http://linkedlifedata.com/resource/umls/label/A11920279', 'http://linkedlifedata.com/resource/umls/label/A11961599', '331.3', 'replisome', 'http://linkedlifedata.com/resource/#_413548343437008', 'TIEG1 protein, human', 'OBETICHOLIC ACID', 'http://yago.org/resource/Rheumatoid_arthritis', 'D008019', 'TIEG-1', 'http://purl.uniprot.org/citations/14562106', 'http://linkedlifedata.com/resource/umls/relation/R108520860', 'http://purl.uniprot.org/pubmed/10584558', 'http://linkedlifedata.com/resource/#_50363830373700B', 'http://purl.uniprot.org/pubmed/17716225', 'Trial NCT00577837', 'http://linkedlifedata.com/resource/#_503032303937008', 'http://linkedlifedata.com/resource/#_50363830333000A', 'Secondary normal pressure hydrocephalus', 'Normal pressure hydrocephalus (disorder)', 'http://linkedlifedata.com/resource/umls/label/A18043383', 'D024510', 'Postmenopausal Women', 'http://linkedlifedata.com/resource/umls/relation/R108527984', 'Tieg1', 'http://purl.uniprot.org/isoforms/Q12797-4', 'Turcot_syndrome', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/PTPN22', 'EGR-alpha', 'Intervention #23449 (Drug:HCV polymerase inhibitor pro-drug)', 'http://linkedlifedata.com/resource/rxnorm/label/3253230', 'RYR2, ALA4860GLY', 'http://linkedlifedata.com/resource/#_51343558483700B', 'http://purl.uniprot.org/pubmed/10590213', 'Proteins, Surface', 'Hemoglobin gamma chain', 'http://linkedlifedata.com/resource/umls/label/A11675087', 'http://linkedlifedata.com/resource/#_51323838323000E', '600582', 'http://linkedlifedata.com/resource/umls/label/A14203394', 'http://linkedlifedata.com/resource/umls/label/A12983919', 'Trial NCT00149721', 'http://linkedlifedata.com/resource/umls/label/A14201028', 'Condition #10436 (Postmenopausal Women)', 'small nucleolar RNA, C/D box 116-1', 'Dilated cardiomyopathy', 'STAT3-interacting protein as a repressor', 'GK22687', 'RNA, HBII-85 SMALL NUCLEOLAR snoRNA, HBII-85', 'Trial NCT00600795', 'http://linkedlifedata.com/resource/umls/label/A18667225', 'Trial NCT00005515', 'BTPS1', 'http://linkedlifedata.com/resource/umls/label/A11622199', 'http://linkedlifedata.com/resource/umls/relation/R108520862', 'HBG', 'http://linkedlifedata.com/resource/umls/relation/R108520871', 'autistic disorder', 'Phosphothiophosphoric Acid-Adenylate Ester', 'Condition #11608 (Rheumatoid Arthritis)', 'Cardiolipin', 'http://linkedlifedata.com/resource/umls/label/A11957249', 'http://purl.uniprot.org/medline/86167516', 'http://linkedlifedata.com/resource/#_50303832323400A', 'http://linkedlifedata.com/resource/umls/label/A17721534', 'Cardiovascular Syndromes, Metabolic', 'http://linkedlifedata.com/resource/umls/label/A7833732', 'Junctin protein, Oryctolagus cuniculus', 'Mammary gland tumor', 'Postmenopausal', 'http://linkedlifedata.com/resource/umls/id/C1622568', 'http://linkedlifedata.com/resource/umls/label/A3832170', 'http://purl.uniprot.org/medline/97313269', 'http://linkedlifedata.com/resource/umls/id/C2341629', 'Charcot-Marie-Tooth disease, axonal, Type 2D', 'http://linkedlifedata.com/resource/umls/label/A16608081', 'http://linkedlifedata.com/resource/umls/relation/R108520873', 'high density lipoprotein receptors', 'denosumab', 'http://linkedlifedata.com/resource/umls/label/A7663266', 'http://linkedlifedata.com/resource/umls/label/A16611904', 'BRAF Gene Mutation', 'http://purl.uniprot.org/citations/9169873', 'aspartate beta-hydroxylase', 'http://linkedlifedata.com/resource/umls/label/A18627521', 'http://linkedlifedata.com/resource/umls/label/A12000929', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 2; CPVT2, ASP307HIS', 'http://linkedlifedata.com/resource/umls/label/A0432241', 'http://purl.uniprot.org/pubmed/12853948', 'Inter-alpha-inhibitor heavy chain 3 protein, human', 'http://linkedlifedata.com/resource/umls/label/A8400718', 'D057906', 'Pseudopodium tip', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/DB00619', 'Trial NCT00384072', 'Trial NCT00006539', 'http://linkedlifedata.com/resource/umls/label/A19649207', 'http://linkedlifedata.com/resource/umls/label/A6898590', 'biological_process', 'Tieg', 'Trial NCT00667667', 'http://linkedlifedata.com/resource/#_503832313739006', 'Idiopathic normal pressure hydrocephalus (INPH)', 'Paraffin', 'glyburide', 'http://linkedlifedata.com/resource/umls/label/A15583787', 'Calsequestrin binding protein, rabbit', 'Gene Ontology', 'ITI-HC3', 'http://linkedlifedata.com/resource/geneontology/id/GO:0005925', 'http://linkedlifedata.com/resource/umls/id/C1416508', 'Desvenlafaxine 50 MG [Pristiq]', 'http://linkedlifedata.com/resource/#_513435584837008', 'http://linkedlifedata.com/resource/#_503038323234007', 'http://linkedlifedata.com/resource/umls/label/A16615646', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/chromosomalLocation/3p21.3', 'http://linkedlifedata.com/resource/umls/relation/R54292288', 'http://linkedlifedata.com/resource/#_513133313138001D', 'http://linkedlifedata.com/resource/#_42344846363400D', 'Muscle Proteins', 'http://linkedlifedata.com/resource/umls/label/A20221619', 'http://linkedlifedata.com/resource/umls/label/A0363751', 'http://linkedlifedata.com/resource/#_503138343336009', 'http://linkedlifedata.com/resource/umls/id/C0012940', 'http://linkedlifedata.com/resource/#_503638303331008', 'http://linkedlifedata.com/resource/umls/relation/R108520858', 'http://linkedlifedata.com/resource/umls/label/A15585362', 'valproic acid', 'http://linkedlifedata.com/resource/#_5131353934320030', 'http://linkedlifedata.com/resource/umls/label/A7658697', 'http://linkedlifedata.com/resource/umls/label/A7636217', 'http://linkedlifedata.com/resource/umls/label/A0064005', 'http://linkedlifedata.com/resource/umls/label/A11610160', 'http://linkedlifedata.com/resource/#_51343558483500B', 'CHARCOT-MARIE-TOOTH DISEASE, NEURONAL, TYPE 2D', 'mutations', 'Trial NCT00005185', 'Tuberous sclerosis-2, 191100', 'Bypass of stop codon protein 6', 'muscle protein', 'Muscle proteins', 'http://purl.uniprot.org/pubmed/9169873', 'http://linkedlifedata.com/resource/#_503038323235007', 'RXNORM', 'http://linkedlifedata.com/resource/umls/label/A15575023', 'Cell adhesion', 'http://linkedlifedata.com/resource/#_513435584838008', 'http://linkedlifedata.com/resource/umls/label/A8407072', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/PMS2', 'http://linkedlifedata.com/resource/umls/relation/R108527989', 'http://linkedlifedata.com/resource/pubmed/mesh/Anxiety', 'http://linkedlifedata.com/resource/umls/label/A18683550', '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl (dihydroxyphosphinothioyloxy-hydroxyphosphoryl) hydrogen phosphate', 'http://linkedlifedata.com/resource/#_4F3634393936005', '(Idiopathic) normal pressure hydrocephalus', 'http://linkedlifedata.com/resource/umls/relation/R108535496', 'http://linkedlifedata.com/resource/#_513435584836009', 'http://linkedlifedata.com/resource/umls/label/A17863878', 'http://purl.uniprot.org/go/0006936', 'http://linkedlifedata.com/resource/umls/relation/R108520865', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, GLN4201ARG', 'Junctin-1', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/4102', 'http://linkedlifedata.com/resource/umls/label/A17460629', 'hemi-adherens junction', 'inter-alpha (globulin) inhibitor H3', '846163', 'Pseudopodia', 'http://linkedlifedata.com/resource/#_50303832323500A', 'http://linkedlifedata.com/resource/#_51303536313100D', 'Rheumatoid Arthritis', 'Aptamers, Peptide', 'K-201', 'CHARCOT-MARIE-TOOTH DISEASE, AXONAL, TYPE 2D', 'http://linkedlifedata.com/resource/umls/label/A1361869', 'pseudopodium tip', 'OMIM2009_05_01:MTHU013769', 'http://linkedlifedata.com/resource/umls/label/A15584100', 'H3P', 'http://purl.uniprot.org/medline/97197972', 'Biochemistry', 'http://purl.uniprot.org/citations/9169874', 'http://linkedlifedata.com/resource/#_42314759483300E', 'http://linkedlifedata.com/resource/umls/label/A0363753', 'http://linkedlifedata.com/resource/#_50313937363000D', 'autistic disorders', 'http://linkedlifedata.com/resource/#_503638303331009', 'CASQ2, ASP307HIS', 'Transcription Factor', 'Trial NCT00005446', 'DUX4 protein, human', 'http://linkedlifedata.com/resource/#_51343558483700A', 'Trial NCT00152295', 'ICD-9-CM Entry Terms', 'http://linkedlifedata.com/resource/rxnorm/label/3163336', 'G91.2', 'RNA virus', 'Hemoglobin', 'Protein WHI3', 'Trial NCT00530582', 'http://purl.uniprot.org/uniprot/P53841', 'GH22274', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/COCA2', 'Heat', 'true', 'Treatment', 'aspartate-beta-hydroxylase protein, mouse', 'GBM', 'http://linkedlifedata.com/resource/#_51323938573700B', 'Trial NCT00005173', 'Aspartate beta-hydroxylase', 'http://linkedlifedata.com/resource/#_513435584836008', 'http://linkedlifedata.com/resource/umls/label/A12966357', 'Trial NCT00425776', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, ASN4104LYS', 'http://linkedlifedata.com/resource/#_513237393430008', 'parkin protein', 'http://linkedlifedata.com/resource/umls/label/A10769058', 'http://linkedlifedata.com/resource/umls/label/A0084485', 'http://linkedlifedata.com/resource/umls/relation/R108514872', 'Blood', 'Trial NCT00522873', 'Mammary tumour', 'http://purl.uniprot.org/uniprot/Q05611', 'http://www.geneontology.org/go#GO:0031143', 'D004194', 'C491384', 'foxo', 'cadasil', 'http://linkedlifedata.com/resource/umls/relation/R108520867', 'Binding Protein, DNA', 'Psoralen Ultraviolet A Therapy', 'colorectal adenocarcinoma', 'http://linkedlifedata.com/resource/umls/label/A11649840', 'http://linkedlifedata.com/resource/umls/label/A12977624', 'http://www.dbpedia.org/resource/MLH1', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/diseases/1156', 'http://linkedlifedata.com/resource/umls/label/A11940272', 'http://linkedlifedata.com/resource/#_503638303739007', 'C18940', 'Endoribonuclease Dicer', 'PUVA Therapy', 'http://linkedlifedata.com/resource/#_513237393430009', 'http://linkedlifedata.com/resource/umls/label/A11591254', 'http://linkedlifedata.com/resource/umls/label/A11585268', 'http://linkedlifedata.com/resource/umls/label/A16608078', 'http://linkedlifedata.com/resource/umls/label/A3832745', 'Dilated Cardiomyopathy', 'Paroxetine, an antidepressant drug of the selective serotonin reuptake inhibitor (SSRI) type, has no active metabolites and has the highest specificity for serotonin receptors of all the SSRIs. It is used to treat depression resistant to other antidepressants, depression complicated by anxiety, panic disorder, social and general anxiety disorder, obsessive-compulsive disorder (OCD), premenstrual dysphoric disorder, premature ejaculation, and hot flashes of menopause in women with breast cancer.', 'http://linkedlifedata.com/resource/#_503038323235008', 'Trial NCT00484107', 'Trial NCT00479778', 'http://www.dbpedia.org/resource/Turcot_syndrome', 'http://linkedlifedata.com/resource/umls/label/A17474145', 'http://linkedlifedata.com/resource/umls/label/A20738817', 'OMIM', 'Turcot syndrome with glioblastoma, 276300', 'Methylenetetrahydrofolate reductase', 'http://purl.uniprot.org/pubmed/12052143', 'Trial NCT00000532', 'http://linkedlifedata.com/resource/umls/label/A8405672', 'Histone mono-ubiquitination 1', 'http://linkedlifedata.com/resource/#_503536323835008', 'UMLS_CUI:C1511021', 'Trial NCT00543634', 'Trial NCT00214903', 'HNPCC2', 'KLF10 protein, human', 'Inter-alpha-inhibitor heavy chain 3', 'http://linkedlifedata.com/resource/#_51343558483600A', 'TIRILAZAD', 'D011471', 'Junctin protein, mouse', 'D001847', 'http://linkedlifedata.com/resource/umls/relation/R108533304', 'http://linkedlifedata.com/resource/#_503138343336008', 'Denosumab', 'http://linkedlifedata.com/resource/umls/id/C1690432', 'Trial NCT00123110', 'http://linkedlifedata.com/resource/#_503138343336007', 'Stroke', 'http://purl.uniprot.org/pubmed/14562095', 'http://linkedlifedata.com/resource/#_51375A34483900F', 'http://linkedlifedata.com/resource/#_50303230393700A', 'http://linkedlifedata.com/resource/#_503638303330008', 'http://linkedlifedata.com/resource/umls/relation/R54292286', 'http://linkedlifedata.com/resource/#_4F343931343400F', 'Trial NCT00000481', 'Trial NCT00000555', 'http://linkedlifedata.com/resource/umls/id/C0025252', 'http://linkedlifedata.com/resource/umls/label/A17697331', 'http://linkedlifedata.com/resource/umls/label/A12000927', 'Genet. Res.', 'Obeticholic Acid', 'Infection by Cryptococcus neoformans', 'C522335', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, ALA4860GLY', 'Membrane Proteins', 'Postmenopause', 'http://linkedlifedata.com/resource/umls/relation/R54292289', 'http://www.w3.org/2008/05/skos-xl#Label', 'ABATACEPT 50 MG', 'http://linkedlifedata.com/resource/umls/label/A17777767', 'http://linkedlifedata.com/resource/umls/relation/R108520868', 'http://linkedlifedata.com/resource/umls/label/A12000276', '276300', 'http://linkedlifedata.com/resource/umls/label/A0474410', 'ASPARTYL/ASPARAGINYL-BETA-HYDROXYLASE', 'ITIH3 protein, human', 'Cardiac', 'http://linkedlifedata.com/resource/umls/label/A18459725', 'http://linkedlifedata.com/resource/#_51303536313100C', 'http://www.geneontology.org/go#GO:0016442', 'Cardiomyopathy, Dilated', 'Tuberous_sclerosis', 'http://purl.uniprot.org/tissues/445', 'inter-alpha-inhibitor', 'http://linkedlifedata.com/resource/umls/label/A16773852', 'GI21984', 'UMLS_CUI:C0020258', 'HCV polymerase inhibitor pro-drug', 'Mitofusin-2', 'Cardiovascular Syndrome, Metabolic', 'pre-alpha (globulin) inhibitor, H3 polypeptide', 'mTOR Signaling Pathway', 'http://purl.uniprot.org/citations/10783319', 'http://linkedlifedata.com/resource/umls/label/A18057015', 'http://linkedlifedata.com/resource/umls/label/A1306652', 'Cardiac muscle', 'Klf10', 'http://linkedlifedata.com/resource/umls/label/A17851208', '797', 'normal pressure hydrocephalus', 'http://purl.uniprot.org/pubmed/12566285', 'Mammary tumor', 'RNA Viruses', 'Tuberin', 'Trial NCT00457262', 'junctate protein, mouse', 'Cancer Biomarkers Research Group', 'Inter-alpha-trypsin inhibitor heavy chain H3', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/MLH1', 'http://linkedlifedata.com/resource/#_42344A53433200B', 'Cardiac junctin', 'http://purl.uniprot.org/go/0005925', 'http://linkedlifedata.com/resource/umls/label/A10762572', 'basal cell carcinoma', 'http://linkedlifedata.com/resource/#_503638303731008', 'psoriasis', 'http://linkedlifedata.com/resource/umls/label/A8400271', 'http://linkedlifedata.com/resource/umls/label/A16615879', 'http://purl.uniprot.org/go/0016442', 'D058207', 'Membrane Associated Proteins', 'http://linkedlifedata.com/resource/umls/label/A17748015', 'Mitofusin-1', 'Trial NCT00554255', 'DNA binding protein', 'Proteins, Muscle', 'http://linkedlifedata.com/resource/umls/label/A0487662', 'Trial NCT00160316', 'http://linkedlifedata.com/resource/umls', 'PWCR1', 'http://linkedlifedata.com/resource/#_4F3737363535009', 'calsequestrin binding protein, human', 'inter-alpha-trypsin inhibitor heavy chain H3', 'apremilast', 'Trial NCT00051402', 'http://linkedlifedata.com/resource/umls/label/A11975891', 'http://linkedlifedata.com/resource/umls/label/A16610180', 'http://linkedlifedata.com/resource/umls/label/A17400039', 'MLH1', 'http://linkedlifedata.com/resource/#_503038323235009', 'http://linkedlifedata.com/resource/umls/label/A7582156', 'heat', 'http://purl.uniprot.org/tissues/440', 'Rheumatoid arthritis, susceptibility to, 180300', 'http://linkedlifedata.com/resource/umls/label/A7567988', 'Condition #9056 (Normal Pressure Hydrocephalus)', 'Trial NCT00001890', 'http://linkedlifedata.com/resource/umls/label/A16692007', 'Colorectal Adenocarcinoma', 'Survivin', 'http://purl.uniprot.org/citations/511581', 'Hemoglobin subunit gamma', 'http://linkedlifedata.com/resource/umls/label/A17465421', 'http://linkedlifedata.com/resource/umls/label/A6988771', 'cytosol', 'C475935', 'Bypass of stop codon protein 2', '757', 'http://linkedlifedata.com/resource/umls/label/A17680439', 'VALPROIC ACID', 'G gamma-Globin', 'http://linkedlifedata.com/resource/umls/relation/R108520874', 'http://linkedlifedata.com/resource/umls/label/A7829067', 'Inter alpha trypsin inhibitor', 'http://linkedlifedata.com/resource/#_513237393430007', 'VEMURAFENIB', 'http://purl.uniprot.org/uniprot/Q15942', 'http://linkedlifedata.com/resource/umls/label/A17699205', 'http://linkedlifedata.com/resource/#_42345054443300D', 'http://linkedlifedata.com/resource/umls/label/A7667725', 'http://linkedlifedata.com/resource/umls/label/A11932851', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, ARG2474SER', 'http://linkedlifedata.com/resource/umls/label/A17995522', 'C16181', 'http://linkedlifedata.com/resource/umls/label/A20814698', 'http://linkedlifedata.com/resource/umls/label/A18458985', 'http://linkedlifedata.com/resource/#_503032303937009', 'Trial NCT00006407', 'http://linkedlifedata.com/resource/#_51343558483600B', 'http://linkedlifedata.com/resource/umls/relation/R108527986', 'http://linkedlifedata.com/resource/umls/relation/R108520859', 'Transmembrane GTPase MFN2', 'GDNFIF protein, mouse', 'Trial NCT00199914', 'Desvenlafaxine Extended Release Tablet', 'Flaviviridae infectious disease', 'Phylogenetics', 'Trial NCT00603967', 'http://linkedlifedata.com/resource/#_5035363635320014', 'INTER-ALPHA-TRYPSIN INHIBITOR, HEAVY CHAIN 3', 'http://linkedlifedata.com/resource/umls/label/A11986511', 'Intervention #28754 (Drug:HCV polymerase inhibitor pro-drug)', 'NCI: The syndrome of polyposis coli, colon cancer and brain tumors.', 'http://linkedlifedata.com/resource/#_4F353030333700F', 'http://purl.uniprot.org/pubmed/9111189', 'http://linkedlifedata.com/resource/rxnorm/label/3197303', 'http://linkedlifedata.com/resource/umls/label/A6901933', 'http://linkedlifedata.com/resource/#_503536323835007', 'Trypsin inhibitor, inter-alpha-', 'http://linkedlifedata.com/resource/umls/id/C2341609', 'RNA-induced silencing complex', 'BSC2', 'http://linkedlifedata.com/resource/umls/label/A17751406', 'http://bio2rdf.org/omim:600259', 'Factor, Transcription', 'http://linkedlifedata.com/resource/umls/label/A16688957', 'JCTN', 'Intervention #5132 (Drug:Ethyol (Amifostine))', 'http://purl.uniprot.org/pubmed/16886893', 'http://purl.uniprot.org/pubmed/511581', 'http://linkedlifedata.com/resource/umls/label/A16609958', 'ITIH3 gene', 'http://linkedlifedata.com/resource/umls/label/A8401402', 'Gamma-globin', 'ZYX', 'http://linkedlifedata.com/resource/umls/label/A18458984', 'RYR2, SER2246LEU', 'http://linkedlifedata.com/resource/#_4F373736353500B', 'http://linkedlifedata.com/resource/#_503638303639008', 'Melioidosis', 'Proton Pump Inhibitors', 'http://linkedlifedata.com/resource/umls/label/A0474209', 'http://data.linkedct.org/resource/condition/10436', 'http://purl.uniprot.org/medline/81000303', 'http://purl.uniprot.org/uniprot/P38822', 'http://linkedlifedata.com/resource/umls/label/A16608080', 'http://linkedlifedata.com/resource/umls/label/A16619491', 'TURCOT SYNDROME', 'http://linkedlifedata.com/resource/umls/label/A8256703', 'http://linkedlifedata.com/resource/umls/label/A0560486', 'PUVA therapy', 'http://purl.uniprot.org/pubmed/10783319', 'Transforming growth factor-beta-inducible early growth response protein 1', 'http://purl.uniprot.org/pubmed/105752', 'http://linkedlifedata.com/resource/#_503038323234009', 'Acupuncture', 'http://purl.uniprot.org/citations/2420747', 'UMLS_CUI:C0751587', 'Rheumatoid_arthritis', 'Notch homolog 3 (Drosophila) protein, human', 'HBG_LOXAF', 'JTV-519', 'Membrane proteins', 'C111567', 'Trial NCT00115024', 'radiotherapy, intraoperative', 'Phylogenetic Analysis', 'Intervention #17724 (Procedure:gene therapy)', 'http://linkedlifedata.com/resource/#_51343558483800B', 'http://linkedlifedata.com/resource/umls/relation/R108520864', 'MammaPrint', 'pseudopod', 'http://linkedlifedata.com/resource/umls/relation/R108527987', 'C498841', 'Membrane Proteins [Chemical/Ingredient]', 'Transcription factor GIF', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/CMT2D', 'Turcot syndrome', 'http://purl.uniprot.org/medline/22923954', 'mGIF', 'transcription factor', 'S-100 Immunohistochemistry Staining Method', 'Condition #10430 (Postmenopausal)', 'Trial NCT00577720', 'junctin', 'http://linkedlifedata.com/resource/#_42344D42373800B', 'Tuberous sclerosis 2 protein homolog', 'HNPCC4', 'http://linkedlifedata.com/resource/umls/relation/R54292290', 'http://www4.wiwiss.fu-berlin.de/sider/resource/side_effects/C0003873', 'http://linkedlifedata.com/resource/umls/label/A18571407', 'RYR2, GLN4201ARG', 'http://linkedlifedata.com/resource/#_50363830333100A', 'http://linkedlifedata.com/resource/umls/label/A7835462', 'CDR0000481348', 'TRASTUZUMAB', 'C39159', 'http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=600259', 'http://linkedlifedata.com/resource/umls/label/A11665411', 'GM24148', 'junctate', 'http://linkedlifedata.com/resource/umls/label/A8400212', 'http://linkedlifedata.com/resource/#_42344E46523100B', 'IMATINIB', 'Mitofusin 2', 'BSC1', 'http://linkedlifedata.com/resource/umls/label/A18087179', 'Trial NCT00251082', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, PRO2328SER', 'http://linkedlifedata.com/resource/umls/label/A11703532', 'NCI Thesaurus', 'http://linkedlifedata.com/resource/umls/label/A8401262', 'http://data.linkedct.org/resource/condition/9056', 'Flavivirus (arbovirus group B)', '331.5', 'http://purl.uniprot.org/medline/80071586', 'http://linkedlifedata.com/resource/umls/label/A0107279', 'Tongue', 'http://linkedlifedata.com/resource/umls/relation/R108541476', 'http://linkedlifedata.com/resource/umls/relation/R108520856', 'Trial NCT00094237', 'Normal Pressure Hydrocephalus', 'trastuzumab', 'calsequestrin binding protein, mouse', 'intraoperative radiation therapy', 'http://linkedlifedata.com/resource/umls/label/A17713684', 'junctin protein, human', '605436', 'BSC6', 'BTP1 SYNDROME', 'http://linkedlifedata.com/resource/umls/label/A12000928', '601472', 'Protein, Membrane', 'http://data.linkedct.org/resource/condition/10430', 'G91.0', 'http://purl.uniprot.org/medline/20247096', 'http://linkedlifedata.com/resource/umls/relation/R54393456', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/chromosomalLocation/7p22', 'Trial NCT00000549', 'http://linkedlifedata.com/resource/umls/label/A17727672', 'MFN2_HUMAN', 'Trial NCT00149604', 'DENOSUMAB', 'http://linkedlifedata.com/resource/umls/label/A7186488', 'Trial NCT00550433', 'Zyxin-2', 'C3938', 'http://linkedlifedata.com/resource/umls/label/A6808855', 'RYR2, PRO2328SER', 'X-ray repair cross-complementing protein 1', 'Krueppel-like factor 10', 'nephrotic syndrome', 'GL24235', 'http://purl.uniprot.org/citations/1639402', 'Pseudopod', 'http://linkedlifedata.com/resource/umls/relation/R108520869', 'http://linkedlifedata.com/resource/umls/label/A18645844', 'http://linkedlifedata.com/resource/#_51323739343000A', 'http://linkedlifedata.com/resource/umls/label/A11917539', 'C532958', 'GE24216', 'http://linkedlifedata.com/resource/umls/relation/R54292285', 'Trial NCT00102141', 'Membrane Protein', 'http://purl.uniprot.org/core/Gene', 'http://linkedlifedata.com/resource/#_503638303739009', 'http://linkedlifedata.com/resource/umls/label/A12014936', 'http://linkedlifedata.com/resource/umls/relation/R108520866', 'http://linkedlifedata.com/resource/umls/label/A18458641', 'http://linkedlifedata.com/resource/umls/label/A6983105', 'Autism', 'http://linkedlifedata.com/resource/umls/label/A6812955', 'http://linkedlifedata.com/resource/umls/label/A8395721', 'DNA repair protein XRCC1', 'Pharmacogenomics', 'Association', 'basal cell carcinomas', 'http://linkedlifedata.com/resource/#_50363830373000A', 'http://linkedlifedata.com/resource/umls/label/A13386134', 'http://linkedlifedata.com/resource/umls/label/A16715518', 'http://www.geneontology.org/go#GO:0006936', 'FAK activity', 'http://linkedlifedata.com/resource/umls/label/A16617839', 'http://linkedlifedata.com/resource/umls/label/A8355137', 'JTV 519', 'http://linkedlifedata.com/resource/umls/label/A18681147', 'HUMBUG', 'http://purl.uniprot.org/pubmed/6157408', 'Identification of single nucleotide polymorphisms in human DNA repair genes.', 'http://purl.uniprot.org/uniprot/Q08280', 'http://linkedlifedata.com/resource/#_503638303739008', 'http://linkedlifedata.com/resource/#_5138313155340016', 'http://linkedlifedata.com/resource/rxnorm/label/3263018', 'http://linkedlifedata.com/resource/umls/label/A10788344', 'Peptide-aspartate beta-dioxygenase', 'http://linkedlifedata.com/resource/umls/relation/R109169453', 'C40430', 'http://linkedlifedata.com/resource/#_4F39353134300020', 'Tieg protein, mouse', 'Breast tumor', 'http://linkedlifedata.com/resource/umls/relation/R108520857', 'MSH2010_2010_02_22:D006850', 'autism', 'BRAIN TUMOR-POLYPOSIS SYNDROME 1', 'http://linkedlifedata.com/resource/#_50363830373700A', 'BCC', 'Trial NCT00005220', 'Forkhead box protein O', 'Dux4 protein, mouse', 'http://linkedlifedata.com/resource/#_513435584835008', '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxyoxolan-2-yl]methyl phosphono hydrogen phosphate', 'http://linkedlifedata.com/resource/umls/id/C0040648', 'aspartate beta-hydroxylase protein, human', 'ASPH protein, human', 'http://linkedlifedata.com/resource/umls/label/A11655911', 'MISMATCH REPAIR DEFICIENCY', 'Skeletal muscle', 'D013234', 'Brain', 'http://linkedlifedata.com/resource/umls/label/A18467817', 'Desvenlafaxine 50 MG', 'http://linkedlifedata.com/resource/geneontology/id/GO:0005882', 'http://linkedlifedata.com/resource/#_50353632383500A', 'Trial NCT00435175', 'C536928', 'fda', 'MTHR_HUMAN', 'Zinc finger transcription factor homolog CPG20', 'GDNF-inducible factor', 'MSH2010_2010_02_22:D046589', 'CHARCOT-MARIE-TOOTH NEUROPATHY, TYPE 2D', 'Trial NCT00235586', 'http://linkedlifedata.com/resource/rxnorm/label/1842549', 'http://linkedlifedata.com/resource/rxnorm/label/3130514', 'hsa-mir-126 microRNA', 'http://linkedlifedata.com/resource/umls/label/A11932853', 'http://linkedlifedata.com/resource/umls/relation/R69826314', 'mutation', 'Transcription Factors', 'Trial NCT00380887', 'RYR2, ARG4497CYS', 'membrane protein', 'transcription factors', 'http://linkedlifedata.com/resource/#_51313330363100E', 'DB03431', 'http://linkedlifedata.com/resource/#_503638303737008', 'http://linkedlifedata.com/resource/umls/label/A20020623', 'http://linkedlifedata.com/resource/umls/id/C0035691', 'http://linkedlifedata.com/resource/#_42365A43513700D', 'VENTRICULAR TACHYCARDIA, CATECHOLAMINERGIC POLYMORPHIC, 1; CPVT1, ARG4497CYS', 'http://linkedlifedata.com/resource/umls/id/C0668089', 'PTPN22', 'Nature', 'http://linkedlifedata.com/resource/#_513435584838009', 'Trial NCT00455741', 'Low pressure hydrocephalus', 'http://purl.uniprot.org/pubmed/2420747', 'http://linkedlifedata.com/resource/#_5136313033370015', 'http://linkedlifedata.com/resource/umls/label/A6819849', 'http://linkedlifedata.com/resource/umls/label/A11659990', 'Trial NCT00367536', 'http://linkedlifedata.com/resource/umls/label/A14199533', 'http://linkedlifedata.com/resource/umls/label/A16475868', 'NCT00009386', 'PMS2', 'C109183', 'http://linkedlifedata.com/resource/umls/label/A0043970', 'Heart', 'http://purl.uniprot.org/pubmed/14562106', 'MeSH', 'http://purl.uniprot.org/core/Structured_Name', 'http://linkedlifedata.com/resource/umls/label/A9424108', 'ICD-10-CM', 'http://purl.uniprot.org/keywords/130', 'http://linkedlifedata.com/resource/#_503638303738008', 'http://linkedlifedata.com/resource/umls/id/C0265325', 'GLYBURIDE', 'Granulomatous thyroiditis', 'http://linkedlifedata.com/resource/#_50313834333600A', 'Trial NCT00566553', 'CHILDHOOD CANCER SYNDROME', 'tirilazad', 'http://bio2rdf.org/omim:120436', 'RYR2, ASN4104LYS', 'Condition #10439 (Postmenopause)', 'Trial NCT00011193', 'SNORD116-1 gene', '458-37-7', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugs/DB02930', 'http://linkedlifedata.com/resource/umls/label/A7569590', 'mmu-mir-132', 'K201 compound', 'http://linkedlifedata.com/resource/umls/label/A17997459', 'Tieg1 protein, mouse', 'http://linkedlifedata.com/resource/umls/label/A11674202', 'http://purl.uniprot.org/pubmed/9169874', 'Bypass of stop codon protein 5', 'GF16233', 'http://linkedlifedata.com/resource/#_513056413435009', 'RNA Virus', \"Adenosine-5'-Diphosphate\", 'Trial NCT00000611', 'acupuncture', 'http://linkedlifedata.com/resource/umls/label/A16617838', 'http://linkedlifedata.com/resource/umls/label/A15589751', 'http://linkedlifedata.com/resource/#_51313231343000A', 'CASQ2BP1', 'JTV519', 'http://www.dbpedia.org/resource/Tuberous_sclerosis', 'http://linkedlifedata.com/resource/umls/relation/R119807588', 'http://linkedlifedata.com/resource/umls/label/A19613644', 'http://purl.uniprot.org/keywords/703', 'http://linkedlifedata.com/resource/umls/label/A15515315', 'http://linkedlifedata.com/resource/umls/label/A16606467', 'Frailty', 'http://linkedlifedata.com/resource/#_51323838323000B', 'http://linkedlifedata.com/resource/#_513435584837009', 'ICD-9-CM', '790289', 'http://linkedlifedata.com/resource/umls/label/A15551742', 'http://linkedlifedata.com/resource/#_503638303330009', 'http://linkedlifedata.com/resource/umls/label/A10789460', 'http://linkedlifedata.com/resource/#_50313937363000F', 'membrane proteins', 'http://linkedlifedata.com/resource/#_50363830363800B', 'http://linkedlifedata.com/resource/umls/label/A4352743', 'CMT2D', 'Which DNA polymerases are used for DNA-repair in eukaryotes?', 'http://linkedlifedata.com/resource/umls/relation/R108533303', 'MTHFR', 'http://linkedlifedata.com/resource/umls/label/A0444272', 'http://purl.uniprot.org/medline/92347874', 'http://linkedlifedata.com/resource/umls/label/A18555731', 'Intervention #24333 (Drug:HCV polymerase inhibitor pro-drug)', 'http://linkedlifedata.com/resource/umls/id/C0754680', 'http://linkedlifedata.com/resource/umls/label/A2497986', 'http://linkedlifedata.com/resource/umls/label/A8410044', 'http://linkedlifedata.com/resource/#_51335A4E30380014', 'TGFB inducible early growth response 1 protein, mouse', 'Life Style Induced Illness', 'Diet, cancer and aging in DNA mismatch repair deficient mice.', 'http://linkedlifedata.com/resource/diseaseontology/id/DOID:1886', 'http://linkedlifedata.com/resource/umls/label/A16749653', 'http://linkedlifedata.com/resource/umls/relation/R119807587', 'Muscle Protein', 'Proteins, Membrane', 'http://linkedlifedata.com/resource/umls/label/A0131324', 'http://linkedlifedata.com/resource/umls/label/A0449712', 'Gdnfif', 'pseudopodium membrane', 'NJT', 'http://linkedlifedata.com/resource/umls/relation/R108520870', 'pre-alpha (globulin) inhibitor, H3 polypeptide, human', 'Nephrotic Syndrome', 'http://linkedlifedata.com/resource/umls/relation/R32009562', 'http://purl.uniprot.org/medline/20051947', 'http://linkedlifedata.com/resource/umls/relation/R108527990', 'humbug', 'NOTCH3 protein, human', 'http://linkedlifedata.com/resource/umls/label/A12802315', 'Trial NCT00420576', 'Bypass of stop codon protein 1', 'Intervention #26936 (Drug:HCV polymerase inhibitor pro-drug)', 'JUNCTATE', 'http://linkedlifedata.com/resource/umls/label/A3840964', 'http://purl.uniprot.org/pubmed/17391071', 'Sarcoplasmic reticulum', 'http://linkedlifedata.com/resource/umls/label/A2864120', 'cardiolipin', 'http://linkedlifedata.com/resource/umls/relation/R54438031', 'http://purl.uniprot.org/medline/22923965', 'OMIM2009_05_01:236690', '1', 'Tuberous sclerosis-1, 191100', 'C9orf72', 'http://linkedlifedata.com/resource/#_423147594832004', 'http://linkedlifedata.com/resource/#_503638303331007', 'http://linkedlifedata.com/resource/umls/relation/R54292287', 'http://purl.uniprot.org/tissues/597', 'http://linkedlifedata.com/resource/umls/label/A16617837', 'http://linkedlifedata.com/resource/umls/label/A8414282', 'DNA Binding Proteins', 'GA16248', 'http://linkedlifedata.com/resource/umls/label/A16610181', 'TRANSCRIPTION FACTOR', 'Trial NCT00717145', 'SHAP protein', 'ISOTRETINOIN', 'http://purl.uniprot.org/pubmed/9046088', 'http://linkedlifedata.com/resource/#_42334C59533500D', 'Prolia', 'http://linkedlifedata.com/resource/umls/label/A18593781', 'Trial NCT00701337', 'Trial NCT00006313', 'Protein, Muscle', 'HEART FAILURE', 'C82988', 'http://linkedlifedata.com/resource/#_4F3634393934005', 'http://linkedlifedata.com/resource/umls/label/A17763944', 'Curcumin', 'http://purl.uniprot.org/pubmed/10339464', 'Trial NCT00381251', 'http://linkedlifedata.com/resource/umls/id/C2341627', 'http://www4.wiwiss.fu-berlin.de/drugbank/resource/drugbank/drugs', 'GJ14344', 'http://linkedlifedata.com/resource/umls/id/C0026832', 'http://linkedlifedata.com/resource/umls/label/A0418144', 'http://purl.uniprot.org/tissues/1050', 'RISC complex', 'http://linkedlifedata.com/resource/#_503638303639007', 'Flavivirus infectious disease', 'TGFB-inducible early growth response protein 1', 'http://linkedlifedata.com/resource/#_4F38393039310010', 'http://linkedlifedata.com/resource/umls/label/A16608313', 'National Drug File - Reference Terminology', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/HNPCC4', 'Cardiac tissue', 'Membrane-Associated Proteins', 'Heart muscle', 'Cryptococcus neoformans', 'http://linkedlifedata.com/resource/umls/label/A10769673', 'http://linkedlifedata.com/resource/umls/label/A0484584', 'Trial NCT00000605', 'http://linkedlifedata.com/resource/umls/label/A8414547', 'GG16833', 'gene transplantation for gene therapy', 'http://purl.uniprot.org/pubmed/1639402', 'http://linkedlifedata.com/resource/#_5035333834310018', 'Asph protein, mouse', 'http://www.dbpedia.org/resource/PTPN22', 'Intervention #39568 (Genetic:Gene Therapy)', 'http://purl.uniprot.org/uniprot/P53755', 'Surface Proteins', '6168', 'HUGO', 'Valproic Acid', 'DNA Binding Protein', 'http://linkedlifedata.com/resource/umls/label/A11943486', 'Junctin-2', 'http://www4.wiwiss.fu-berlin.de/diseasome/resource/genes/HNPCC2', 'Trial NCT00222872'}\n",
+      "1227\n"
+     ]
+    }
+   ],
+   "source": [
+    "# take a look at what is in the o field\n",
+    "o = set()\n",
+    "for question in data_both:\n",
+    "    for triple in question[\"triples\"]:\n",
+    "        o.add(triple[\"o\"])\n",
+    "        if \"http\" not in triple[\"o\"]:\n",
+    "            print(\"Not a Link\")\n",
+    "print(o)\n",
+    "print(len(o))"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "505cdedb-728f-44a4-9a8b-d9aed1c86c8a",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.10.12"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/src/ressources/bioasq.txt b/src/ressources/bioasq.txt
new file mode 100644
index 0000000..eb3d10b
--- /dev/null
+++ b/src/ressources/bioasq.txt
@@ -0,0 +1,60 @@
+Create an overview of the tasks and involved data.
+- there have been multiple Tasks since 2013 up until now, relevant ones are
+	- BioASQ Task 1b: Introductory Biomedical Semantic QA
+	- BioASQ Task 2b: Biomedical Semantic QA (Involves IR, QA, Summarization)
+	- BioASQ Task 3b: Biomedical Semantic QA (Involves IR, QA, Summarization)
+	- BioASQ Task 4b: Biomedical Semantic QA (Involves IR, QA, Summarization) -> includes old questions
+	- BioASQ Task 5b: Biomedical Semantic QA (Involves IR, QA, Summarization) old too
+	- BioASQ Task 6b: Biomedical Semantic QA (involves IR, QA, summarization)
+	- BioASQ Task 7b: Biomedical Semantic QA (Involves IR, QA, Summarization)
+	- BioASQ Task 8b: Biomedical Semantic QA (Involves IR, QA, Summarization)
+	- BioASQ Task Synergy: Biomedical Semantic QA For COVID-19 -> supposed to not include rdf triples
+	- BioASQ Task 9b: Biomedical Semantic QA (Involves IR, QA, Summarization)
+	- BioASQ Task 10b: Biomedical Semantic QA (involves IR, QA, summarization)
+	- BioASQ Task Synergy: Biomedical Semantic QA For developing issues -> supposed to not include rdf triples
+	- BioASQ Task 11b: Biomedical Semantic QA (involves IR, QA, summarization)
+	- BioASQ Task 12b: Biomedical Semantic QA (Involves IR, QA, Summarization) -> currently running, more than 5000 trainings questions with golden anwsers + 500 new ones in batches later
+- from 4b onwards it is stated that old questions are included, this does not mean that those befor do not include old questions as well
+- relevant/gold standard rdf triples are from designated ontologies each year and are linked to the relevant question (but do the correct anwsers exist too? does a question state what kind of anwser it expects?)
+- questions in the dataset fall into one of 4 categories
+	1. Yes/No questions -> easy to test/evaluate for now
+	- "Do CpG islands colocalise with transcription start sites?" 
+	2. Factoid questions - require an entity, a number or similar short expression as an anwser
+	- "Which virus is best known as the cause of infectious mononucleosis?" 
+	3. List questions - same as factoid but require a list of anwsers
+	- "Which are the Raf kinase inhibitors?"
+	4. Summary questions - requires short text summarizing prominent relevant information
+	- "What is the treatment of infectious mononucleosis?"
+- http://participants-area.bioasq.org/Tasks/12b/trainingDataset/ includes 5046 questions
+	-> only registered users can download the dataset
+	-> throughout the end of march until the middle of may new data will be released
+- the dataset is provided in json format and the interesting fields per question for us are type, body, exact_anwser and sometimes triples
+	- there exist 322 questions with the field triples and of those 107 are yesno questions
+	- of those 107 every triple has the fields o, p and s and in total there are 1916 triples
+
+How are the triples to be interpreted, since some directly include the medical entities while others include links?
+- the s field is always a link
+	- some of the links lead to working websites and some dont
+	- which links work seems to be based on which knowledge source is used
+	- links that include umls seem to work
+	- links like http://linkedlifedata.com/resource/#_503638303730008 dont seem to work
+- the o field is sometimes a link, sometimes a resolved object and sometimes a code that probably needs to be resolved
+	- whether the code can be resolved depends on whether the source vocabulary can be inferred from s and p
+	- the problems with links from s persists
+	- differentiating code from a resolved object could be hard
+	- example for a code is "Trial NCT00000598"
+- the p field is always a link
+	- the p field can be interpreted by getting the last part of the link ()
+	- there are 5 institutions/base websites from which relations are used
+	- some of them include a more verbose description of the relation
+
+Do the triples make sense?
+- heavyly depends on the triples
+- for now triples based on umls and geneon (possibly more) seem to be the easiest to parse
+
+
+Can we use the triples as graphs?
+- while we could include the triples into/as graphs it would be better for completness sake to create the graphs not from the triples but the designated ontologies
+- as they are now parsing the source vocabularies first and then searching in them with given codes seems to be more promising then evaluating the websites given by the link
+
+- for now the best use case seems to be to go through the questions/triples by hand to find question+triplet+anwser that are usefull for a small experiment of whether triples improve the anwser (accuracy in the case of yesno questions)
diff --git a/src/ressources/listing.md b/src/ressources/listing.md
index fb6bd29..df3781d 100644
--- a/src/ressources/listing.md
+++ b/src/ressources/listing.md
@@ -6,7 +6,10 @@
 - Wikidata Diseases
     - ?
 - BioASQ
-    - ?
+    - Organizes challenges on biomedical semantic indexing and question anwsering
+    - There are 4 question types in the training data for QA
+    - Some of the training data include rdf triples from specified onthologies
+    - Examples and more information in bioasq.txt
     
 - Datenbank von Harry umls.db
     - Database that's highly likely a unidentified subsets of UMLS
-- 
GitLab